IL_6GSK_051

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6GSK|1|13|C|1400, 6GSK|1|13|A|1503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_051 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2242

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6GSK|1|13|C|1399
6GSK|1|13|C|1400
6GSK|1|13|G|1401
*
6GSK|1|13|C|1501
6GSK|1|13|A|1502
6GSK|1|13|A|1503
6GSK|1|13|G|1504

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 2K

Transfer RNA; tRNA

Chain 4K

mRNA