IL_6GSK_059

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

6GSK|1|13|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_059 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.4037

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

6GSK|1|13|C|1440
6GSK|1|13|G|1441
6GSK|1|13|G|1442
6GSK|1|13|G|1443
6GSK|1|13|A|1446
6GSK|1|13|G|1447
*
6GSK|1|13|C|1459
6GSK|1|13|A|1460
6GSK|1|13|G|1461

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain B8

50S ribosomal protein L19

Chain BI

30S ribosomal protein S20