IL_6GSK_067

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GCGUG*CC

Length

7 nucleotides

Bulged bases

6GSK|1|14|U|271|||C

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_067 not in the Motif Atlas

Geometric match to IL_7Q82_001

Geometric discrepancy: 0.106

The information below is about IL_7Q82_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6GSK|1|14|G|271
6GSK|1|14|C|271|||A
6GSK|1|14|G|271|||B
6GSK|1|14|U|271|||C
6GSK|1|14|G|272
*
6GSK|1|14|C|365
6GSK|1|14|C|366

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9