IL_6GSK_073

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6GSK|1|14|U|504, 6GSK|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_073 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0799

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6GSK|1|14|G|481
6GSK|1|14|A|482
6GSK|1|14|A|483
6GSK|1|14|C|484
*
6GSK|1|14|G|496
6GSK|1|14|A|497
6GSK|1|14|G|498
6GSK|1|14|U|499
6GSK|1|14|G|500
6GSK|1|14|A|501
6GSK|1|14|A|502
6GSK|1|14|A|503
6GSK|1|14|U|504
6GSK|1|14|A|505
6GSK|1|14|G|506
6GSK|1|14|A|507
6GSK|1|14|G|508
6GSK|1|14|C|509

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24