IL_6GSK_077

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6GSK|1|14|G|801, 6GSK|1|14|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_077 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0814

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

6GSK|1|14|G|674
6GSK|1|14|A|675
6GSK|1|14|A|676
6GSK|1|14|A|677
6GSK|1|14|C|678
*
6GSK|1|14|G|799
6GSK|1|14|A|800
6GSK|1|14|G|801
6GSK|1|14|A|802
6GSK|1|14|U|803
6GSK|1|14|A|804
6GSK|1|14|G|805
6GSK|1|14|C|806

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4