IL_6GSK_099

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6GSK|1|14|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_099 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1201

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6GSK|1|14|C|1208
6GSK|1|14|G|1209
6GSK|1|14|A|1210
6GSK|1|14|U|1211
6GSK|1|14|G|1212
6GSK|1|14|A|1213
6GSK|1|14|A|1214
6GSK|1|14|G|1215
*
6GSK|1|14|U|1234
6GSK|1|14|G|1235
6GSK|1|14|G|1236
6GSK|1|14|A|1237
6GSK|1|14|G|1238

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20