IL_6GSK_109

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

6GSK|1|14|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_109 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.1192

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GSK|1|14|C|1437
6GSK|1|14|U|1438
6GSK|1|14|A|1439
6GSK|1|14|G|1440
*
6GSK|1|14|C|1551
6GSK|1|14|G|1552
6GSK|1|14|A|1553
6GSK|1|14|A|1554
6GSK|1|14|G|1555

Current chains

Chain 14

23S ribosomal RNA

Nearby chains