IL_6GSK_113

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

6GSK|1|14|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_113 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.4181

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6GSK|1|14|U|1482
6GSK|1|14|G|1483
*
6GSK|1|14|C|1506
6GSK|1|14|A|1507
6GSK|1|14|A|1508
6GSK|1|14|C|1509
6GSK|1|14|A|1510
6GSK|1|14|A|1511
6GSK|1|14|G|1512

Current chains

Chain 14

23S ribosomal RNA

Nearby chains