IL_6GSK_115

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6GSK|1|14|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_115 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.2738

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6GSK|1|14|G|1526
6GSK|1|14|G|1527
6GSK|1|14|A|1528
6GSK|1|14|A|1529
6GSK|1|14|G|1530
*
6GSK|1|14|U|1541
6GSK|1|14|G|1542
6GSK|1|14|A|1543
6GSK|1|14|C|1544
6GSK|1|14|A|1545
6GSK|1|14|A|1545|||A
6GSK|1|14|C|1546

Current chains

Chain 14

23S ribosomal RNA

Nearby chains