IL_6GSK_172

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6GSK|1|1G|G|129|||A, 6GSK|1|1G|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_172 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1206

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6GSK|1|1G|U|129
6GSK|1|1G|G|129|||A
6GSK|1|1G|A|130
6GSK|1|1G|C|131
*
6GSK|1|1G|G|231
6GSK|1|1G|G|232

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain 8A

30S ribosomal protein S17

Chain BA

30S ribosomal protein S20