IL_6GSK_184

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_184 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.105

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6GSK|1|1G|G|450
6GSK|1|1G|A|451
6GSK|1|1G|A|452
6GSK|1|1G|A|453
6GSK|1|1G|C|454
6GSK|1|1G|C|455
*
6GSK|1|1G|G|477
6GSK|1|1G|A|478
6GSK|1|1G|C|479
6GSK|1|1G|U|480
6GSK|1|1G|G|481
6GSK|1|1G|A|482
6GSK|1|1G|C|483

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16