IL_6GSK_196
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6GSK|1|1G|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_196 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.1047
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6GSK|1|1G|G|683
6GSK|1|1G|A|684
6GSK|1|1G|G|685
6GSK|1|1G|U|686
6GSK|1|1G|A|687
6GSK|1|1G|G|688
*
6GSK|1|1G|C|699
6GSK|1|1G|G|700
6GSK|1|1G|C|701
6GSK|1|1G|A|702
6GSK|1|1G|G|703
6GSK|1|1G|A|704
6GSK|1|1G|U|705
6GSK|1|1G|A|706
6GSK|1|1G|C|707
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2A
- 30S ribosomal protein S11
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