IL_6GSK_200

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

6GSK|1|1G|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_200 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2924

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6GSK|1|1G|U|921
6GSK|1|1G|G|922
6GSK|1|1G|A|923
*
6GSK|1|1G|U|1393
6GSK|1|1G|A|1394
6GSK|1|1G|C|1395
6GSK|1|1G|A|1396

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 42

30S ribosomal protein S5