IL_6GSK_263
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 6GSK|1|1H|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_263 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.1754
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6GSK|1|1H|C|1043
6GSK|1|1H|G|1044
6GSK|1|1H|A|1045
6GSK|1|1H|A|1046
6GSK|1|1H|G|1047
6GSK|1|1H|A|1048
6GSK|1|1H|C|1049
6GSK|1|1H|A|1050
6GSK|1|1H|G|1051
*
6GSK|1|1H|U|1108
6GSK|1|1H|C|1109
6GSK|1|1H|G|1110
6GSK|1|1H|A|1111
6GSK|1|1H|G|1112
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 51
- 50S ribosomal protein L6
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