IL_6GSK_302

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

6GSK|1|1H|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_302 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0948

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6GSK|1|1H|C|2081
6GSK|1|1H|A|2082
6GSK|1|1H|G|2083
*
6GSK|1|1H|C|2236
6GSK|1|1H|G|2237
6GSK|1|1H|G|2238
6GSK|1|1H|G|2239

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 3K

Transfer RNA; tRNA

Chain J8

50S ribosomal protein L28