IL_6GSK_325

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

6GSK|1|1H|U|2689, 6GSK|1|1H|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_325 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0881

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6GSK|1|1H|U|2687
6GSK|1|1H|U|2688
6GSK|1|1H|U|2689
6GSK|1|1H|C|2690
6GSK|1|1H|C|2691
*
6GSK|1|1H|G|2718
6GSK|1|1H|G|2719
6GSK|1|1H|U|2720
6GSK|1|1H|A|2721
6GSK|1|1H|G|2722

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19