IL_6GSK_340

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGCG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_340 not in the Motif Atlas

Homologous match to IL_6CZR_136

Geometric discrepancy: 0.1744

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6GSK|1|13|G|594
6GSK|1|13|G|595
6GSK|1|13|C|596
6GSK|1|13|G|597
*
6GSK|1|13|C|643
6GSK|1|13|G|644
6GSK|1|13|C|645

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7E

30S ribosomal protein S8

Chain 8I

30S ribosomal protein S17