3D structure

PDB id
6GSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.36 Å

Loop

Sequence
CGCUGAC*GGUGGAG
Length
14 nucleotides
Bulged bases
6GSK|1|14|G|932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GSK_351 not in the Motif Atlas
Homologous match to IL_9DFE_024
Geometric discrepancy: 0.173
The information below is about IL_9DFE_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68243.1
Basepair signature
cWW-L-cWW-cWW-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6GSK|1|14|C|844
6GSK|1|14|G|845
6GSK|1|14|C|846
6GSK|1|14|U|847
6GSK|1|14|G|848
6GSK|1|14|A|849
6GSK|1|14|C|850
*
6GSK|1|14|G|928
6GSK|1|14|G|929
6GSK|1|14|U|930
6GSK|1|14|G|931
6GSK|1|14|G|932
6GSK|1|14|A|933
6GSK|1|14|G|934

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain H5
50S ribosomal protein L30

Coloring options:


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