IL_6GSK_356

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CAGAAG*UGGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_356 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3574

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GSK|1|14|C|1468
6GSK|1|14|A|1469
6GSK|1|14|G|1470
6GSK|1|14|A|1471
6GSK|1|14|A|1472
6GSK|1|14|G|1473
*
6GSK|1|14|U|1520
6GSK|1|14|G|1521
6GSK|1|14|G|1522
6GSK|1|14|U|1523
6GSK|1|14|G|1524

Current chains

Chain 14

23S ribosomal RNA

Nearby chains