IL_6GSK_359
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6GSK|1|14|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_359 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.1444
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6GSK|1|14|U|2636
6GSK|1|14|U|2637
6GSK|1|14|G|2638
6GSK|1|14|A|2639
6GSK|1|14|G|2640
*
6GSK|1|14|C|2774
6GSK|1|14|A|2775
6GSK|1|14|A|2776
6GSK|1|14|G|2777
6GSK|1|14|A|2778
6GSK|1|14|U|2779
6GSK|1|14|G|2780
6GSK|1|14|A|2781
6GSK|1|14|G|2782
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L13
- Chain 29
- 50S ribosomal protein L3
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