IL_6GSK_369
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CGGAUUGG*CCAUGAAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_369 not in the Motif Atlas
- Geometric match to IL_4WF9_119
- Geometric discrepancy: 0.3152
- The information below is about IL_4WF9_119
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00087.1
- Basepair signature
- cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GSK|1|1G|C|1303
6GSK|1|1G|G|1304
6GSK|1|1G|G|1305
6GSK|1|1G|A|1306
6GSK|1|1G|U|1307
6GSK|1|1G|U|1308
6GSK|1|1G|G|1309
6GSK|1|1G|G|1310
*
6GSK|1|1G|C|1327
6GSK|1|1G|C|1328
6GSK|1|1G|A|1329
6GSK|1|1G|U|1330
6GSK|1|1G|G|1331
6GSK|1|1G|A|1332
6GSK|1|1G|A|1333
6GSK|1|1G|G|1334
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1B
- 30S ribosomal protein Thx
- Chain 4A
- 30S ribosomal protein S13
- Chain AA
- 30S ribosomal protein S19
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