IL_6GSK_376

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGGGAG*CGAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_376 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3595

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

6GSK|1|1H|G|1855
6GSK|1|1H|G|1856
6GSK|1|1H|G|1857
6GSK|1|1H|G|1858
6GSK|1|1H|A|1859
6GSK|1|1H|G|1860
*
6GSK|1|1H|C|1882
6GSK|1|1H|G|1883
6GSK|1|1H|A|1884
6GSK|1|1H|A|1885
6GSK|1|1H|C|1886
6GSK|1|1H|C|1887

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain J8

50S ribosomal protein L28