IL_6GSK_386
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 6GSK|1|1G|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_386 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.1525
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6GSK|1|1G|G|933
6GSK|1|1G|C|934
6GSK|1|1G|A|935
*
6GSK|1|1G|U|1380
6GSK|1|1G|U|1381
6GSK|1|1G|C|1382
6GSK|1|1G|C|1383
6GSK|1|1G|C|1384
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 2L
- Transfer RNA; tRNA
- Chain 3L
- Transfer RNA; tRNA
- Chain 62
- 30S ribosomal protein S7
- Chain 82
- 30S ribosomal protein S9
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