IL_6GSL_001

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUGA*UAC

Length

7 nucleotides

Bulged bases

6GSL|1|13|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_001 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2406

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GSL|1|13|G|29
6GSL|1|13|U|30
6GSL|1|13|G|31
6GSL|1|13|A|32
*
6GSL|1|13|U|552
6GSL|1|13|A|553
6GSL|1|13|C|554

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4

Chain 3I

30S ribosomal protein S12