IL_6GSL_047

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

6GSL|1|13|U|1257, 6GSL|1|13|A|1280, 6GSL|1|13|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_047 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1888

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6GSL|1|13|G|1255
6GSL|1|13|A|1256
6GSL|1|13|U|1257
6GSL|1|13|G|1258
*
6GSL|1|13|C|1277
6GSL|1|13|U|1278
6GSL|1|13|A|1279
6GSL|1|13|A|1280
6GSL|1|13|U|1281
6GSL|1|13|C|1282

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1I

30S ribosomal protein S10

Chain 2E

30S ribosomal protein S3

Chain 5I

30S ribosomal protein S14 type Z