IL_6GSL_049

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_049 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1252

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6GSL|1|13|C|1303
6GSL|1|13|G|1304
6GSL|1|13|G|1305
6GSL|1|13|A|1306
6GSL|1|13|U|1307
6GSL|1|13|U|1308
*
6GSL|1|13|A|1329
6GSL|1|13|U|1330
6GSL|1|13|G|1331
6GSL|1|13|A|1332
6GSL|1|13|A|1333
6GSL|1|13|G|1334

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1F

30S ribosomal protein Thx

Chain 4I

30S ribosomal protein S13