IL_6GSL_068

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_068 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2602

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6GSL|1|14|G|273
6GSL|1|14|G|273|||A
6GSL|1|14|C|273|||B
*
6GSL|1|14|G|363|||D
6GSL|1|14|U|363|||E
6GSL|1|14|A|363|||F
6GSL|1|14|C|364

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9