IL_6GSL_099

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

6GSL|1|14|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_099 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.3582

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6GSL|1|14|G|1059
6GSL|1|14|U|1060
6GSL|1|14|U|1061
6GSL|1|14|G|1062
6GSL|1|14|G|1063
*
6GSL|1|14|C|1075
6GSL|1|14|C|1076
6GSL|1|14|A|1077
6GSL|1|14|U|1078
6GSL|1|14|C|1079

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L25