IL_6GSL_107

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6GSL|1|14|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_107 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0641

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6GSL|1|14|C|1351
6GSL|1|14|U|1352
6GSL|1|14|A|1353
6GSL|1|14|A|1354
6GSL|1|14|G|1355
*
6GSL|1|14|C|1376
6GSL|1|14|G|1377
6GSL|1|14|A|1378
6GSL|1|14|A|1379
6GSL|1|14|G|1380

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34