IL_6GSL_132

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6GSL|1|14|A|1938, 6GSL|1|14|U|1944, 6GSL|1|14|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_132 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1067

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6GSL|1|14|C|1934
6GSL|1|14|G|1935
6GSL|1|14|A|1936
6GSL|1|14|A|1937
6GSL|1|14|A|1938
6GSL|1|14|U|1939
6GSL|1|14|U|1940
6GSL|1|14|C|1941
6GSL|1|14|C|1942
6GSL|1|14|U|1943
6GSL|1|14|U|1944
6GSL|1|14|G|1945
*
6GSL|1|14|C|1961
6GSL|1|14|C|1962
6GSL|1|14|U|1963
6GSL|1|14|G|1964

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 1L

Transfer RNA; tRNA