IL_6GSL_151

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_151 not in the Motif Atlas

Homologous match to IL_7RQB_096

Geometric discrepancy: 0.0831

The information below is about IL_7RQB_096

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_76223.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

6GSL|1|14|C|2507
6GSL|1|14|G|2508
*
6GSL|1|14|U|2580
6GSL|1|14|G|2581
6GSL|1|14|G|2582

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 29

50S ribosomal protein L3

Chain J5

50S ribosomal protein L32