IL_6GSL_161

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6GSL|1|14|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_161 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.0908

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GSL|1|14|G|2737
6GSL|1|14|A|2738
6GSL|1|14|U|2739
6GSL|1|14|A|2740
6GSL|1|14|A|2741
6GSL|1|14|C|2742
*
6GSL|1|14|G|2762
6GSL|1|14|G|2763
6GSL|1|14|A|2764
6GSL|1|14|A|2765
6GSL|1|14|G|2766
6GSL|1|14|C|2767

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6