IL_6GSL_181

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6GSL|1|1G|U|244, 6GSL|1|1G|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_181 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0877

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6GSL|1|1G|C|242
6GSL|1|1G|A|243
6GSL|1|1G|U|244
6GSL|1|1G|C|245
6GSL|1|1G|A|246
6GSL|1|1G|G|247
*
6GSL|1|1G|C|277
6GSL|1|1G|G|278
6GSL|1|1G|A|279
6GSL|1|1G|C|280
6GSL|1|1G|G|281
6GSL|1|1G|A|282
6GSL|1|1G|C|283
6GSL|1|1G|G|284

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12

Chain 8A

30S ribosomal protein S17