IL_6GSL_189

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_189 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0825

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6GSL|1|1G|G|450
6GSL|1|1G|A|451
6GSL|1|1G|A|452
6GSL|1|1G|A|453
6GSL|1|1G|C|454
6GSL|1|1G|C|455
*
6GSL|1|1G|G|477
6GSL|1|1G|A|478
6GSL|1|1G|C|479
6GSL|1|1G|U|480
6GSL|1|1G|G|481
6GSL|1|1G|A|482
6GSL|1|1G|C|483

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16