IL_6GSL_207

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6GSL|1|1G|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_207 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1138

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6GSL|1|1G|G|933
6GSL|1|1G|C|934
6GSL|1|1G|A|935
*
6GSL|1|1G|U|1380
6GSL|1|1G|U|1381
6GSL|1|1G|C|1382
6GSL|1|1G|C|1383
6GSL|1|1G|C|1384

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 3L

Transfer RNA; tRNA

Chain 62

30S ribosomal protein S7