IL_6GSL_221

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_221 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1395

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GSL|1|1G|G|1401
6GSL|1|1G|C|1402
6GSL|1|1G|C|1403
6GSL|1|1G|C|1404
*
6GSL|1|1G|G|1497
6GSL|1|1G|U|1498
6GSL|1|1G|A|1499
6GSL|1|1G|A|1500
6GSL|1|1G|C|1501

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2L

Transfer RNA; tRNA

Chain 4L

mRNA