IL_6GSL_239

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6GSL|1|1H|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_239 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1315

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GSL|1|1H|C|280
6GSL|1|1H|G|281
6GSL|1|1H|A|282
6GSL|1|1H|A|283
6GSL|1|1H|U|284
*
6GSL|1|1H|A|357
6GSL|1|1H|U|358
6GSL|1|1H|A|359
6GSL|1|1H|G|360

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains