IL_6GSL_334

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_334 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0813

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6GSL|1|1H|U|2847
6GSL|1|1H|G|2848
6GSL|1|1H|U|2849
6GSL|1|1H|A|2850
6GSL|1|1H|A|2851
6GSL|1|1H|G|2852
*
6GSL|1|1H|U|2865
6GSL|1|1H|U|2866
6GSL|1|1H|G|2867
6GSL|1|1H|A|2868
6GSL|1|1H|G|2869

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19