IL_6GSL_355

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6GSL|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_355 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1629

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GSL|1|14|C|844
6GSL|1|14|G|845
6GSL|1|14|C|846
6GSL|1|14|U|847
6GSL|1|14|G|848
6GSL|1|14|A|849
6GSL|1|14|C|850
*
6GSL|1|14|G|928
6GSL|1|14|G|929
6GSL|1|14|U|930
6GSL|1|14|G|931
6GSL|1|14|G|932
6GSL|1|14|A|933
6GSL|1|14|G|934

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain H5

50S ribosomal protein L30