IL_6GSL_361

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_361 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1737

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6GSL|1|14|C|2652
6GSL|1|14|U|2653
6GSL|1|14|A|2654
6GSL|1|14|G|2655
6GSL|1|14|U|2656
6GSL|1|14|A|2657
6GSL|1|14|C|2658
*
6GSL|1|14|G|2663
6GSL|1|14|G|2664
6GSL|1|14|A|2665
6GSL|1|14|C|2666
6GSL|1|14|C|2667
6GSL|1|14|G|2668

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6