IL_6GSM_004

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

6GSM|1|2|U|45, 6GSM|1|2|A|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_004 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.1859

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6GSM|1|2|G|42
6GSM|1|2|A|43
6GSM|1|2|U|44
6GSM|1|2|U|45
6GSM|1|2|A|46
6GSM|1|2|A|47
6GSM|1|2|G|48
*
6GSM|1|2|C|430
6GSM|1|2|G|431
6GSM|1|2|C|432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

RPS23

Chain p

Eukaryotic translation initiation factor 3 subunit B