IL_6GSM_012

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GGAUAUC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6GSM|1|2|U|169

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_012 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1742

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6GSM|1|2|G|142
6GSM|1|2|G|143
6GSM|1|2|A|144
6GSM|1|2|U|145
6GSM|1|2|A|146
6GSM|1|2|U|147
6GSM|1|2|C|148
*
6GSM|1|2|G|164
6GSM|1|2|C|165
6GSM|1|2|U|166
6GSM|1|2|A|167
6GSM|1|2|A|168
6GSM|1|2|U|169
6GSM|1|2|A|170
6GSM|1|2|C|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24