IL_6GSM_022

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6GSM|1|2|U|379

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_022 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1571

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6GSM|1|2|G|362
6GSM|1|2|G|363
6GSM|1|2|G|364
*
6GSM|1|2|C|375
6GSM|1|2|G|376
6GSM|1|2|A|377
6GSM|1|2|U|378
6GSM|1|2|U|379
6GSM|1|2|C|380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain X

RPS23