IL_6GSM_029

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_029 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.317

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

6GSM|1|2|U|516
6GSM|1|2|A|517
6GSM|1|2|C|518
6GSM|1|2|A|519
*
6GSM|1|2|U|531
6GSM|1|2|U|532
6GSM|1|2|A|533
6GSM|1|2|A|534

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24