IL_6GSM_051

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_051 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1895

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6GSM|1|2|G|1110
6GSM|1|2|G|1111
6GSM|1|2|A|1112
6GSM|1|2|G|1113
6GSM|1|2|U|1114
6GSM|1|2|A|1115
6GSM|1|2|U|1116
6GSM|1|2|G|1117
*
6GSM|1|2|U|1128
6GSM|1|2|G|1129
6GSM|1|2|A|1130
6GSM|1|2|A|1131
6GSM|1|2|A|1132
6GSM|1|2|C|1133

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

RPS23

Chain h

eL41