IL_6GSM_058

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GA*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_058 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2796

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6GSM|1|2|G|1232
6GSM|1|2|A|1233
*
6GSM|1|2|U|1249
6GSM|1|2|U|1250
6GSM|1|2|C|1251

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S12

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a