IL_6GSM_065
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- CCUAC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6GSM|1|2|U|1339
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_065 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.3869
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
6GSM|1|2|C|1337
6GSM|1|2|C|1338
6GSM|1|2|U|1339
6GSM|1|2|A|1340
6GSM|1|2|C|1341
*
6GSM|1|2|G|1381
6GSM|1|2|A|1382
6GSM|1|2|G|1383
6GSM|1|2|G|1384
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S16
- Chain R
- KLLA0B01474p
- Chain U
- KLLA0F25542p
- Chain g
- KLLA0E12277p
Coloring options: