IL_6GSM_068
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- CUAU*AUGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_068 not in the Motif Atlas
- Geometric match to IL_4LFB_050
- Geometric discrepancy: 0.3667
- The information below is about IL_4LFB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32376.2
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
6GSM|1|2|C|1387
6GSM|1|2|U|1388
6GSM|1|2|A|1389
6GSM|1|2|U|1390
*
6GSM|1|2|A|1404
6GSM|1|2|U|1405
6GSM|1|2|G|1406
6GSM|1|2|G|1407
6GSM|1|2|A|1408
6GSM|1|2|A|1409
6GSM|1|2|G|1410
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- KLLA0D10659p
- Chain Q
- 40S ribosomal protein S16
- Chain R
- KLLA0B01474p
- Chain c
- 40S ribosomal protein S28
- Chain g
- KLLA0E12277p
Coloring options: