IL_6GSM_069
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_069 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.1805
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GSM|1|2|G|1478
6GSM|1|2|C|1479
6GSM|1|2|C|1480
6GSM|1|2|A|1481
6GSM|1|2|G|1482
6GSM|1|2|C|1483
6GSM|1|2|G|1484
6GSM|1|2|A|1485
*
6GSM|1|2|U|1517
6GSM|1|2|U|1518
6GSM|1|2|G|1519
6GSM|1|2|U|1520
6GSM|1|2|G|1521
6GSM|1|2|A|1522
6GSM|1|2|A|1523
6GSM|1|2|A|1524
6GSM|1|2|C|1525
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- KLLA0D08305p
- Chain F
- KLLA0D10659p
- Chain Q
- 40S ribosomal protein S16
- Chain T
- KLLA0A07194p
- Chain U
- KLLA0F25542p
- Chain Z
- KLLA0B06182p
- Chain d
- 40S ribosomal protein S29
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