IL_6GSM_073
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 6GSM|1|2|C|1635, 6GSM|1|2|A|1764
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_073 not in the Motif Atlas
- Homologous match to IL_4V88_463
- Geometric discrepancy: 0.2219
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GSM|1|2|C|1634
6GSM|1|2|C|1635
6GSM|1|2|G|1636
*
6GSM|1|2|C|1762
6GSM|1|2|A|1763
6GSM|1|2|A|1764
6GSM|1|2|G|1765
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
- Chain h
- eL41
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